Detailed information of SNP:
|
SNP ID:
sf0324929573(Gbrowse)
Chromosome: chr03 Position: 24929573 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.06% | 40.94% |
| All Indica | 799 | 29.54% | 70.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 32.53% | 67.47% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324929573 | A->T | LOC_Os03g44340(LOC_Os03g44340.1) | INTRON |