Detailed information of SNP:
|
SNP ID:
sf0324943199(Gbrowse)
Chromosome: chr03 Position: 24943199 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.86% | 47.14% |
| All Indica | 798 | 25.69% | 74.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 31.82% | 68.18% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324943199 | A->G | LOC_Os03g44370(LOC_Os03g44370.1) | Synonymous |