Detailed information of SNP:
|
SNP ID:
sf0324947591(Gbrowse)
Chromosome: chr03 Position: 24947591 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.33% | 47.67% |
| All Indica | 799 | 24.91% | 75.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324947591 | C->T | INTERGENIC | None |