Detailed information of SNP:
|
SNP ID:
sf0324947922(Gbrowse)
Chromosome: chr03 Position: 24947922 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1245 | 93.98% | 6.02% |
| All Indica | 762 | 96.98% | 3.02% |
| All Japonica | 365 | 85.75% | 14.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 99.42% | 0.58% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 205 | 90.73% | 9.27% |
| Temperate Japonica | 248 | 79.44% | 20.56% |
| Tropical Japonica | 65 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 98.08% | 1.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0324947922 | G->A | INTERGENIC | None |