Detailed information of SNP:
|
SNP ID:
sf0325097589(Gbrowse)
Chromosome: chr03 Position: 25097589 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 95.74% | 4.26% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 60 | 15.00% | 85.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325097589 | G->T | INTERGENIC | None |