Detailed information of SNP:
|
SNP ID:
sf0325097966(Gbrowse)
Chromosome: chr03 Position: 25097966 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 96.27% | 3.73% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 451 | 89.14% | 10.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 84.77% | 15.23% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 95.00% | 5.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325097966 | T->C | INTERGENIC | None |