Detailed information of SNP:
|
SNP ID:
sf0325186900(Gbrowse)
Chromosome: chr03 Position: 25186900 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1206 | 93.95% | 6.05% |
| All Indica | 673 | 89.15% | 10.85% |
| All Japonica | 417 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 319 | 80.88% | 19.12% |
| Indica II | 172 | 98.84% | 1.16% |
| Indica Intermediate | 182 | 94.51% | 5.49% |
| Temperate Japonica | 283 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325186900 | C->T | INTERGENIC | None |