Detailed information of SNP:
|
SNP ID:
sf0325241482(Gbrowse)
Chromosome: chr03 Position: 25241482 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.22% | 10.78% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325241482 | G->A | INTERGENIC | None |