Detailed information of SNP:
|
SNP ID:
sf0325645863(Gbrowse)
Chromosome: chr03 Position: 25645863 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1281 | 94.93% | 5.07% |
| All Indica | 725 | 91.17% | 8.83% |
| All Japonica | 441 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 337 | 81.60% | 18.40% |
| Indica II | 190 | 99.47% | 0.53% |
| Indica Intermediate | 198 | 99.49% | 0.51% |
| Temperate Japonica | 293 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325645863 | A->G | INTERGENIC | None |