Detailed information of SNP:
|
SNP ID:
sf0325664517(Gbrowse)
Chromosome: chr03 Position: 25664517 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.81% | 3.19% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 490 | 94.69% | 5.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 328 | 92.07% | 7.93% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325664517 | A->T | INTERGENIC | None |