Detailed information of SNP:
|
SNP ID:
sf0325677211(Gbrowse)
Chromosome: chr03 Position: 25677211 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1308 | 83.18% | 16.82% |
| All Indica | 738 | 94.04% | 5.96% |
| All Japonica | 454 | 67.84% | 32.16% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 349 | 98.28% | 1.72% |
| Indica II | 186 | 97.31% | 2.69% |
| Indica Intermediate | 203 | 83.74% | 16.26% |
| Temperate Japonica | 310 | 69.35% | 30.65% |
| Tropical Japonica | 82 | 71.95% | 28.05% |
| Japonica Intermediate | 62 | 54.84% | 45.16% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325677211 | T->C | INTERGENIC | None |