Detailed information of SNP:
|
SNP ID:
sf0325683614(Gbrowse)
Chromosome: chr03 Position: 25683614 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 84.55% | 15.45% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 495 | 71.11% | 28.89% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 72.16% | 27.84% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325683614 | C->A | INTERGENIC | None |