Detailed information of SNP:
|
SNP ID:
sf0325686049(Gbrowse)
Chromosome: chr03 Position: 25686049 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 81.77% | 18.23% |
| All Indica | 795 | 95.22% | 4.78% |
| All Japonica | 491 | 61.91% | 38.09% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 331 | 58.01% | 41.99% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325686049 | A->T | LOC_Os03g45519(LOC_Os03g45519.1) | Non-Synonymous SNP |