Detailed information of SNP:



SNP ID: sf0325694435(Gbrowse)

Chromosome: chr03

Position: 25694435
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1409 98.15% 1.85%
All Indica795 99.75% 0.25%
All Japonica491 95.11% 4.89%
Aus67 100.00% 0.00%
Indica I373 100.00% 0.00%
Indica II212 99.53% 0.47%
Indica Intermediate210 99.52% 0.48%
Temperate Japonica331 92.75% 7.25%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate66 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0325694435 C->T INTERGENIC None