Detailed information of SNP:
|
SNP ID:
sf0325720552(Gbrowse)
Chromosome: chr03 Position: 25720552 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1256 | 96.42% | 3.58% |
| All Indica | 666 | 93.24% | 6.76% |
| All Japonica | 472 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 303 | 93.40% | 6.60% |
| Indica II | 183 | 98.36% | 1.64% |
| Indica Intermediate | 180 | 87.78% | 12.22% |
| Temperate Japonica | 317 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325720552 | C->A | INTERGENIC | None |