Detailed information of SNP:
|
SNP ID:
sf0325722260(Gbrowse)
Chromosome: chr03 Position: 25722260 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 95.68% | 4.32% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 493 | 91.89% | 8.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 331 | 89.73% | 10.27% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325722260 | T->G | INTERGENIC | None |