Detailed information of SNP:
|
SNP ID:
sf0325761006(Gbrowse)
Chromosome: chr03 Position: 25761006 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.27% | 15.73% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 496 | 70.77% | 29.23% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325761006 | T->C | LOC_Os03g45650(LOC_Os03g45650.1) | Non-Synonymous SNP |