Detailed information of SNP:
|
SNP ID:
sf0325761040(Gbrowse)
Chromosome: chr03 Position: 25761040 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 83.72% | 16.28% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 70.82% | 29.18% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325761040 | A->G | LOC_Os03g45650(LOC_Os03g45650.1) | Synonymous |