Detailed information of SNP:
|
SNP ID:
sf0325921511(Gbrowse)
Chromosome: chr03 Position: 25921511 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 52.15% | 47.85% |
| All Indica | 784 | 31.89% | 68.11% |
| All Japonica | 491 | 76.58% | 23.42% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 368 | 35.60% | 64.40% |
| Indica II | 208 | 15.38% | 84.62% |
| Indica Intermediate | 208 | 41.83% | 58.17% |
| Temperate Japonica | 332 | 79.52% | 20.48% |
| Tropical Japonica | 91 | 53.85% | 46.15% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0325921511 | G->A | INTERGENIC | None |