Detailed information of SNP:
|
SNP ID:
sf0326002578(Gbrowse)
Chromosome: chr03 Position: 26002578 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 97.39% | 2.61% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326002578 | T->A | LOC_Os03g45990(LOC_Os03g45990.1) | UTR_3_PRIME |