Detailed information of SNP:
|
SNP ID:
sf0326154488(Gbrowse)
Chromosome: chr03 Position: 26154488 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1160 | 93.10% | 6.90% |
| All Indica | 654 | 87.77% | 12.23% |
| All Japonica | 395 | 100.00% | 0.00% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 282 | 81.21% | 18.79% |
| Indica II | 194 | 99.48% | 0.52% |
| Indica Intermediate | 178 | 85.39% | 14.61% |
| Temperate Japonica | 254 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326154488 | C->T | INTERGENIC | None |