Detailed information of SNP:
|
SNP ID:
sf0326404423(Gbrowse)
Chromosome: chr03 Position: 26404423 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.67% | 5.33% |
| All Indica | 793 | 90.67% | 9.33% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 84.95% | 15.05% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326404423 | C->T | INTERGENIC | None |