Detailed information of SNP:
|
SNP ID:
sf0326417721(Gbrowse)
Chromosome: chr03 Position: 26417721 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 59.10% | 40.90% |
| All Indica | 786 | 51.02% | 48.98% |
| All Japonica | 483 | 73.29% | 26.71% |
| Aus | 60 | 58.33% | 41.67% |
| Indica I | 368 | 30.16% | 69.84% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 206 | 50.00% | 50.00% |
| Temperate Japonica | 326 | 86.50% | 13.50% |
| Tropical Japonica | 89 | 31.46% | 68.54% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326417721 | T->G | INTERGENIC | None |