Detailed information of SNP:
|
SNP ID:
sf0326466458(Gbrowse)
Chromosome: chr03 Position: 26466458 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.01% | 22.99% |
| All Indica | 798 | 59.77% | 40.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326466458 | G->A | LOC_Os03g46800(LOC_Os03g46800.1) | Synonymous |