Detailed information of SNP:
|
SNP ID:
sf0326687745(Gbrowse)
Chromosome: chr03 Position: 26687745 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1313 | 94.14% | 5.86% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 396 | 81.06% | 18.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 238 | 71.01% | 28.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326687745 | A->T | LOC_Os03g47169(LOC_Os03g47169.1) | Non-Synonymous SNP |