Detailed information of SNP:
|
SNP ID:
sf0326750623(Gbrowse)
Chromosome: chr03 Position: 26750623 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 72.88% | 27.12% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 488 | 26.64% | 73.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 329 | 7.90% | 92.10% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326750623 | A->G | INTERGENIC | None |