Detailed information of SNP:
|
SNP ID:
sf0326820329(Gbrowse)
Chromosome: chr03 Position: 26820329 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1163 | 86.76% | 13.24% |
| All Indica | 762 | 98.29% | 1.71% |
| All Japonica | 283 | 53.00% | 47.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 99.46% | 0.54% |
| Indica II | 207 | 98.55% | 1.45% |
| Indica Intermediate | 185 | 95.68% | 4.32% |
| Temperate Japonica | 153 | 81.70% | 18.30% |
| Tropical Japonica | 79 | 3.80% | 96.20% |
| Japonica Intermediate | 51 | 43.14% | 56.86% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326820329 | C->A | INTERGENIC | None |