Detailed information of SNP:
|
SNP ID:
sf0326850417(Gbrowse)
Chromosome: chr03 Position: 26850417 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 799 | 18.02% | 81.98% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 17.33% | 82.67% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326850417 | G->A | INTERGENIC | None |