Detailed information of SNP:
|
SNP ID:
sf0326893494(Gbrowse)
Chromosome: chr03 Position: 26893494 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 93.51% | 6.49% |
| All Indica | 777 | 90.35% | 9.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 76.27% | 23.73% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 200 | 73.50% | 26.50% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326893494 | G->A | LOC_Os03g47570(LOC_Os03g47570.1) | Non-Synonymous SNP |