Detailed information of SNP:
|
SNP ID:
sf0326923123(Gbrowse)
Chromosome: chr03 Position: 26923123 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.67% | 44.33% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326923123 | C->T | INTERGENIC | None |