Detailed information of SNP:
|
SNP ID:
sf0326926809(Gbrowse)
Chromosome: chr03 Position: 26926809 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 89.25% | 10.75% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 484 | 71.07% | 28.93% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 91.79% | 8.21% |
| Tropical Japonica | 90 | 7.78% | 92.22% |
| Japonica Intermediate | 65 | 53.85% | 46.15% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326926809 | G->A | INTERGENIC | None |