Detailed information of SNP:
|
SNP ID:
sf0326927581(Gbrowse)
Chromosome: chr03 Position: 26927581 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.88% | 24.12% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 497 | 36.22% | 63.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326927581 | A->C | INTERGENIC | None |