Detailed information of SNP:
|
SNP ID:
sf0326965516(Gbrowse)
Chromosome: chr03 Position: 26965516 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.97% | 40.03% |
| All Indica | 796 | 95.73% | 4.27% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326965516 | T->A | INTERGENIC | None |