Detailed information of SNP:
|
SNP ID:
sf0326974504(Gbrowse)
Chromosome: chr03 Position: 26974504 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1281 | 55.19% | 44.81% |
| All Indica | 669 | 74.89% | 25.11% |
| All Japonica | 495 | 35.35% | 64.65% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 308 | 63.64% | 36.36% |
| Indica II | 175 | 91.43% | 8.57% |
| Indica Intermediate | 186 | 77.96% | 22.04% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0326974504 | T->C | LOC_Os03g47640(LOC_Os03g47640.1) | INTRON |