Detailed information of SNP:
|
SNP ID:
sf0327030779(Gbrowse)
Chromosome: chr03 Position: 27030779 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 57.83% | 42.17% |
| All Indica | 782 | 95.65% | 4.35% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 366 | 94.81% | 5.19% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327030779 | C->T | LOC_Os03g47702(LOC_Os03g47702.1) | Synonymous |