Detailed information of SNP:
|
SNP ID:
sf0327124163(Gbrowse)
Chromosome: chr03 Position: 27124163 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 76.11% | 23.89% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 35.22% | 64.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327124163 | G->C | INTERGENIC | None |