Detailed information of SNP:
|
SNP ID:
sf0327152790(Gbrowse)
Chromosome: chr03 Position: 27152790 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 93.09% | 6.91% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327152790 | A->G | LOC_Os03g47820(LOC_Os03g47820.1) | INTRON |