Detailed information of SNP:
|
SNP ID:
sf0327162943(Gbrowse)
Chromosome: chr03 Position: 27162943 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.37% | 45.63% |
| All Indica | 798 | 84.84% | 15.16% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327162943 | G->A | LOC_Os03g47830(LOC_Os03g47830.1) | Synonymous |