Detailed information of SNP:
|
SNP ID:
sf0327178753(Gbrowse)
Chromosome: chr03 Position: 27178753 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 54.22% | 45.78% |
| All Indica | 794 | 85.14% | 14.86% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327178753 | T->C | LOC_Os03g47840(LOC_Os03g47840.1) | Non-Synonymous SNP |