Detailed information of SNP:
SNP ID:
sf0327329427(Gbrowse)
Chromosome: chr03 Position: 27329427 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 51.37% | 48.63% |
All Indica | 799 | 79.47% | 20.53% |
All Japonica | 497 | 0.80% | 99.20% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 64.80% | 35.20% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 86.73% | 13.27% |
Temperate Japonica | 335 | 0.60% | 99.40% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0327329427 | C->A | LOC_Os03g48060(LOC_Os03g48060.1) | INTRON |