Detailed information of SNP:
|
SNP ID:
sf0327338306(Gbrowse)
Chromosome: chr03 Position: 27338306 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 98.09% | 1.91% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327338306 | C->A | LOC_Os03g48080(LOC_Os03g48080.1) | INTRON |