Detailed information of SNP:
|
SNP ID:
sf0327369199(Gbrowse)
Chromosome: chr03 Position: 27369199 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 78.77% | 21.23% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 442 | 36.43% | 63.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 302 | 16.23% | 83.77% |
| Tropical Japonica | 82 | 96.34% | 3.66% |
| Japonica Intermediate | 58 | 56.90% | 43.10% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327369199 | A->G | LOC_Os03g48140(LOC_Os03g48140.1) | Synonymous |