Detailed information of SNP:
|
SNP ID:
sf0327417377(Gbrowse)
Chromosome: chr03 Position: 27417377 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.99% | 11.01% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 495 | 71.52% | 28.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 59.28% | 40.72% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327417377 | G->A | INTERGENIC | None |