Detailed information of SNP:
|
SNP ID:
sf0327435299(Gbrowse)
Chromosome: chr03 Position: 27435299 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.10% | 43.90% |
| All Indica | 797 | 33.38% | 66.62% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 30.83% | 69.17% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327435299 | G->A | INTERGENIC | None |