Detailed information of SNP:
|
SNP ID:
sf0327516277(Gbrowse)
Chromosome: chr03 Position: 27516277 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 68.81% | 31.19% |
| All Indica | 798 | 55.89% | 44.11% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327516277 | T->C | INTERGENIC | None |