Detailed information of SNP:
|
SNP ID:
sf0327519545(Gbrowse)
Chromosome: chr03 Position: 27519545 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 92.23% | 7.77% |
| All Indica | 736 | 86.28% | 13.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 84.93% | 15.07% |
| Indica II | 192 | 90.62% | 9.38% |
| Indica Intermediate | 199 | 84.42% | 15.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327519545 | C->T | LOC_Os03g48330(LOC_Os03g48330.1) | Non-Synonymous SNP |