Detailed information of SNP:
|
SNP ID:
sf0327519547(Gbrowse)
Chromosome: chr03 Position: 27519547 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 77.44% | 22.56% |
| All Indica | 775 | 88.13% | 11.87% |
| All Japonica | 496 | 71.17% | 28.83% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 357 | 85.99% | 14.01% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 334 | 59.28% | 40.72% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327519547 | T->G | LOC_Os03g48330(LOC_Os03g48330.1) | Non-Synonymous SNP |