Detailed information of SNP:
|
SNP ID:
sf0327523124(Gbrowse)
Chromosome: chr03 Position: 27523124 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 90.96% | 9.04% |
| All Indica | 714 | 83.61% | 16.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 337 | 81.31% | 18.69% |
| Indica II | 187 | 87.17% | 12.83% |
| Indica Intermediate | 190 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327523124 | G->A | LOC_Os03g48350(LOC_Os03g48350.1) | INTRON |
| sf0327523124 | G->A | LOC_Os03g48350(LOC_Os03g48350.1) | SNPs that disrupt splice sites |