Detailed information of SNP:
|
SNP ID:
sf0327528266(Gbrowse)
Chromosome: chr03 Position: 27528266 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 97.60% | 2.40% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 494 | 94.94% | 5.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 93.07% | 6.93% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327528266 | C->T | LOC_Os03g48364(LOC_Os03g48364.1) | Non-Synonymous SNP |