Detailed information of SNP:
|
SNP ID:
sf0327567173(Gbrowse)
Chromosome: chr03 Position: 27567173 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1320 | 93.64% | 6.36% |
| All Indica | 700 | 99.86% | 0.14% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 291 | 99.66% | 0.34% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 197 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327567173 | C->T | INTERGENIC | None |